1. 包列表
  2. 类列表
  3. org.apache.commons.io.FilenameUtils

Java 类org.apache.commons.io.FilenameUtils 实例源码

项目：DIA-Umpire-Maven    文件：LCMSPeakBase.java    
private boolean FS_PeakClusterRead() {
    if (!new File(FilenameUtils.getFullPath(ParentmzXMLName) + FilenameUtils.getBaseName(ParentmzXMLName) + "_Peak/" + FilenameUtils.getBaseName(ScanCollectionName) + "_PeakCluster.serFS").exists()) {
        return false;
    }
    try {
        Logger.getRootLogger().info("Reading PeakCluster serialization from file:" + FilenameUtils.getBaseName(ScanCollectionName) + "_PeakCluster.serFS...");

        FileInputStream fileIn = new FileInputStream(FilenameUtils.getFullPath(ParentmzXMLName) + FilenameUtils.getBaseName(ParentmzXMLName) + "_Peak/" + FilenameUtils.getBaseName(ScanCollectionName) + "_PeakCluster.serFS");
        FSTObjectInput in = new FSTObjectInput(fileIn);
        PeakClusters = (ArrayList<PeakCluster>) in.readObject();
        in.close();
        fileIn.close();
    } catch (Exception ex) {
        Logger.getRootLogger().error(ExceptionUtils.getStackTrace(ex));
        if (FS_PeakClusterRead_Old()) {
            WritePeakClusterSerialization();
            return true;
        }
        Logger.getRootLogger().error(ExceptionUtils.getStackTrace(ex));
        return false;
    }
    return true;
}
项目：DIA-Umpire-Maven    文件：LCMSID.java    
private boolean FSWrite(String filepath, String tag) {
    try {
        if (!tag.equals("")) {
            tag = "_" + tag;
        }
        Logger.getRootLogger().info("Writing ID results to file:" + FilenameUtils.getFullPath(filepath) + FilenameUtils.getBaseName(filepath) + tag + "_LCMSID.serFS...");
        FileOutputStream fout = new FileOutputStream(FilenameUtils.getFullPath(filepath) + FilenameUtils.getBaseName(filepath) + tag + "_LCMSID.serFS", false);
        FSTObjectOutput out = new FSTObjectOutput(fout);
        ReduceMemoryUsage();
        out.writeObject(this, LCMSID.class);
        out.close();
        fout.close();
    } catch (Exception ex) {
        Logger.getRootLogger().error(ExceptionUtils.getStackTrace(ex));
        return false;
    }
    return true;
}
项目：jhipster-microservices-example    文件：WebConfigurerTest.java    
@Test
public void testCustomizeServletContainer() {
    env.setActiveProfiles(JHipsterConstants.SPRING_PROFILE_PRODUCTION);
    UndertowEmbeddedServletContainerFactory container = new UndertowEmbeddedServletContainerFactory();
    webConfigurer.customize(container);
    assertThat(container.getMimeMappings().get("abs")).isEqualTo("audio/x-mpeg");
    assertThat(container.getMimeMappings().get("html")).isEqualTo("text/html;charset=utf-8");
    assertThat(container.getMimeMappings().get("json")).isEqualTo("text/html;charset=utf-8");
    if (container.getDocumentRoot() != null) {
        assertThat(container.getDocumentRoot().getPath()).isEqualTo(FilenameUtils.separatorsToSystem("target/www"));
    }

    Builder builder = Undertow.builder();
    container.getBuilderCustomizers().forEach(c -> c.customize(builder));
    OptionMap.Builder serverOptions = (OptionMap.Builder) ReflectionTestUtils.getField(builder, "serverOptions");
    assertThat(serverOptions.getMap().get(UndertowOptions.ENABLE_HTTP2)).isNull();
}
项目：SkyDocs    文件：DocsPage.java    
/**
 * Creates a new DocsPage instance.
 * 
 * @param project The project this page belongs to.
 * @param title The title of this page.
 * @param language The language of this page.
 * @param file The file (HTML or MarkDown) that represents the content of this page.
 */

public DocsPage(final DocsProject project, final File file) {
    final Map<String, Object> header = Utils.decodeFileHeader(Utils.separateFileHeader(file)[0]);

    this.project = project;
    this.title = header != null && header.containsKey(Constants.KEY_HEADER_TITLE) ? header.get(Constants.KEY_HEADER_TITLE).toString() : StringUtils.capitalize(FilenameUtils.removeExtension(file.getName()));
    this.language = header != null && header.containsKey(Constants.KEY_HEADER_LANGUAGE) ? header.get(Constants.KEY_HEADER_LANGUAGE).toString() : project.getDefaultLanguage();
    this.absolutePath = file.getPath();
    this.path = absolutePath.replace(project.getContentDirectory().getPath(), "").replace(project.getBuildDirectory().getPath(), "");
    this.relativeURL = getBuildDestination().getPath().replace(project.getBuildDirectory().getPath(), "").replace(File.separator, "/");

    if(header != null) {
        if(header.containsKey(Constants.KEY_HEADER_PREVIOUS)) {
            this.previous = header.get(Constants.KEY_HEADER_PREVIOUS).toString();
        }
        if(header.containsKey(Constants.KEY_HEADER_NEXT)) {
            this.next = header.get(Constants.KEY_HEADER_NEXT).toString();
        }
        this.header.putAll(header);
    }
}
项目：sctalk    文件：ThumbUrlUtils.java    
/**
 * 缩略图文件URL/ID编辑 <br>
 * 取原图
 * 
 * @param thumbUrl 缩略图
 * @return 原图URL
 */
public static String getOrgiUrl(String thumbUrl) {

    if (thumbUrl == null) {
        return null;
    }

    String extension = FilenameUtils.getExtension(thumbUrl);
    if (extension == null) {
        return thumbUrl;
    }

    if ("jpg".equalsIgnoreCase(extension)) {
        // 缩略图
    } else if ("png".equalsIgnoreCase(extension)) {
        // 缩略图
    } else {
        return thumbUrl;
    }

    return thumbUrl.replaceAll("_\\d+x\\d+\\." + extension + "$", "." + extension);
}
项目：DIA-Umpire-Maven    文件：TargetMatchScoring.java    
public static TargetMatchScoring LibraryMatchRead(String Filename, String LibID) throws FileNotFoundException {

        if (!new File(FilenameUtils.getFullPath(Filename) + FilenameUtils.getBaseName(Filename) + "_" + LibID + "_LibMatch.serFS").exists()) {
            return null;
        }
        TargetMatchScoring match = null;
        try {
            Logger.getRootLogger().info("Loading Target library match results to file:" + FilenameUtils.getFullPath(Filename) + FilenameUtils.getBaseName(Filename) + "_" + LibID + "_LibMatch.serFS...");
            FileInputStream fileIn = new FileInputStream(FilenameUtils.getFullPath(Filename) + FilenameUtils.getBaseName(Filename) + "_" + LibID + "_LibMatch.serFS");
            FSTObjectInput in = new FSTObjectInput(fileIn);
            match = (TargetMatchScoring) in.readObject();
            in.close();
            fileIn.close();
        } catch (Exception ex) {
            Logger.getRootLogger().error(ExceptionUtils.getStackTrace(ex));
            return null;
        }
        return match;
    }
项目：onprom    文件：UMLDiagramPanel.java    
public void exportImage() {
  try {
    File file = IOUtility.selectFileToSave(FileType.IMAGE);
    if (file != null) {
      Rectangle drawingArea = getDrawingArea();
      String extension = FilenameUtils.getExtension(file.getName());
      if (extension.equals("svg")) {
        SVGGraphics2D svgGenerator = IOUtility.getSVGGraphics(drawingArea.getSize());
        paintDrawing(svgGenerator, drawingArea.x, drawingArea.y);
        svgGenerator.stream(new FileWriter(file));
        svgGenerator.dispose();
      } else {
        BufferedImage bi = new BufferedImage(drawingArea.width, drawingArea.height, BufferedImage.TYPE_INT_RGB);
        Graphics g = bi.createGraphics();
        paintDrawing(g, drawingArea.x, drawingArea.y);
        ImageIO.write(bi, extension, file);
        g.dispose();
      }
    }
  } catch (Exception e) {
    e.printStackTrace();
  }
}
项目：buenojo    文件：ImageResourceService.java    
public ImageResource createImageResource(MultipartFile loResImage, MultipartFile hiResImage, Boolean dryRun) throws IOException, BuenOjoFileException, BuenOjoInconsistencyException {
    ImageResource imageResource = new ImageResource();
    if (loResImage!=null) {
        if (imageResource.getName()==null)
            imageResource.setName(FilenameUtils.removeExtension(loResImage.getOriginalFilename()));
        imageResource.setLoResImage(loResImage.getBytes());
        imageResource.setLoResImageContentType(loResImage.getContentType());

    }
    if (hiResImage != null){
        if (imageResource.getName()==null)
            imageResource.setName(FilenameUtils.removeExtension(hiResImage.getOriginalFilename()));
        imageResource.setHiResImage(hiResImage.getBytes());
        imageResource.setHiResImageContentType(hiResImage.getContentType());

    }
    return createImageResource(imageResource,dryRun);
}
项目：DIA-Umpire-Maven    文件：PKLScanParser.java    
private void Parse() throws FileNotFoundException, IOException {
    //806.080993652344,8429.974609375,1
    //832.287536621094,7226.927734375,1
    //854.039978027344,6682.37646484375,1
    //861.061340332031,8370.4716796875,1
    BufferedReader reader = new BufferedReader(new FileReader(filename));
    String line = "";
    String[] Values = null;
    scan = new ScanData();
    scan.MGFTitle = FilenameUtils.getBaseName(filename);
    while ((line = reader.readLine()) != null) {
        if ((Values = line.split(",")).length == 3) {
            scan.AddPoint(Float.parseFloat(Values[0]), Float.parseFloat(Values[1]));
        }
    }
    reader.close();
}
项目：buenojo    文件：BuenOjoFileUtils.java    
public static Optional<String> contentType(Path path) {

    String extension = FilenameUtils.getExtension(path.getFileName().toString());

    switch (extension.toLowerCase()) {
    case "jpeg":
        return Optional.of("image/jpeg");
    case "jpg":
        return Optional.of("image/jpg");
    case "png":
        return Optional.of("image/png");
    case "gif":
        return Optional.of("image/gif");
    case "tif":
    case "tiff":
        return Optional.of("image/tiff");
    case "csv":
        return Optional.of("text/csv");
    default:            
        return Optional.empty();
    }

}
项目：monarch    文件：ClusterConfigurationService.java    
public ClusterConfigurationService(Cache cache) throws IOException {
  this.cache = (GemFireCacheImpl) cache;
  Properties properties = cache.getDistributedSystem().getProperties();
  // resolve the cluster config dir
  String clusterConfigRootDir = properties.getProperty(CLUSTER_CONFIGURATION_DIR);

  if (StringUtils.isBlank(clusterConfigRootDir)) {
    clusterConfigRootDir = System.getProperty("user.dir");
  } else {
    File diskDir = new File(clusterConfigRootDir);
    if (!diskDir.exists() && !diskDir.mkdirs()) {
      throw new IOException("Cannot create directory : " + clusterConfigRootDir);
    }
    clusterConfigRootDir = diskDir.getCanonicalPath();
  }

  // resolve the file paths
  String configDiskDirName =
      CLUSTER_CONFIG_DISK_DIR_PREFIX + cache.getDistributedSystem().getName();

  configDirPath = FilenameUtils.concat(clusterConfigRootDir, CLUSTER_CONFIG_ARTIFACTS_DIR_NAME);
  configDiskDirPath = FilenameUtils.concat(clusterConfigRootDir, configDiskDirName);
  sharedConfigLockingService = getSharedConfigLockService(cache.getDistributedSystem());
  status.set(SharedConfigurationStatus.NOT_STARTED);
}
项目：coffee-gb    文件：Cartridge.java    
private static int[] loadFile(File file) throws IOException {
    String ext = FilenameUtils.getExtension(file.getName());
    try (InputStream is = new FileInputStream(file)) {
        if ("zip".equalsIgnoreCase(ext)) {
            try (ZipInputStream zis = new ZipInputStream(is)) {
                ZipEntry entry;
                while ((entry = zis.getNextEntry()) != null) {
                    String name = entry.getName();
                    String entryExt = FilenameUtils.getExtension(name);
                    if (Stream.of("gb", "gbc", "rom").anyMatch(e -> e.equalsIgnoreCase(entryExt))) {
                        return load(zis, (int) entry.getSize());
                    }
                    zis.closeEntry();
                }
            }
            throw new IllegalArgumentException("Can't find ROM file inside the zip.");
        } else {
            return load(is, (int) file.length());
        }
    }
}
项目：cloud-portal    文件：MailTemplateService.java    
@PostConstruct
public void init() {

    try {

        File mailFolder = resourceService.getClasspathResource(TEMPLATE_FOLDER_NAME);
        if (!mailFolder.isFile()) {
            File[] mailFolderArray = mailFolder.listFiles();
            for (File mailTemplateFile : mailFolderArray) {
                String mailTemplateName = FilenameUtils.getBaseName(mailTemplateFile.getName());
                String mailTemplatePath = TEMPLATE_FOLDER_NAME + File.separator + mailTemplateFile.getName(); 
                mailTemplateMap.put(mailTemplateName, mailTemplatePath);
            }
        }
    }
    catch (Exception e) {
        LOG.error(e.getMessage(), e);
    }
}
项目：CORNETTO    文件：ExportImageController.java    
/**
 * Detects the filetype of the selected output file based on the file extension and selects radio buttons accordingly
 * @param fileName String with the filename of the selected output file
 * @return
 */
private String setFileType(String fileName) {
    String ext = FilenameUtils.getExtension(fileName);
    System.out.println("FT: " + ext);
    switch (ext) {
        case "png":
            imgRadioPng.setSelected(true);
            break;
        case "jpg":
            imgRadioJpg.setSelected(true);
            break;
        case "jpeg":
            imgRadioJpg.setSelected(true);
            break;
        case "gif":
            imgRadioGif.setSelected(true);
            break;
        default:
            System.out.println("No Correct File Ending");
            break;
    }
    return ext;
}
项目：DIA-Umpire-Maven    文件：DIA_Umpire_ProtQuant.java    
private static void SaintOutput(LCMSID protID, LCMSID IDsummary, FragmentSelection fragselection, FileWriter interactionfile, String filename, String samplename, HashMap<String, String> PreyID, int quanttype) throws IOException {
    for (String key : protID.ProteinList.keySet()) {
        if (IDsummary.ProteinList.containsKey(key)) {
            ProtID protein = IDsummary.ProteinList.get(key);
            float abundance = 0f;

            if (quanttype == 1) {
                abundance = protein.GetAbundanceByMS1_IBAQ();
            } else if (quanttype == 2) {
                abundance = protein.GetAbundanceByTopCorrFragAcrossSample(fragselection.TopPeps.get(protein.getAccNo()), fragselection.TopFrags);
            }
            if (abundance > 0) {
                interactionfile.write(FilenameUtils.getBaseName(filename) + "\t" + samplename + "\t" + protein.getAccNo() + "\t" + abundance + "\n");
                if (!PreyID.containsKey(protein.getAccNo())) {
                    PreyID.put(protein.getAccNo(), /*protein.Sequence.length()+"\t"+*/ protein.GetGeneName());
                }
            }
        }
    }
}
项目：sponge    文件：DefaultKnowledgeBaseManager.java    
public KnowledgeBaseType inferKnowledgeBaseType(ScriptKnowledgeBase scriptKnowledgeBase) {
    List<KnowledgeBaseScript> scripts = scriptKnowledgeBase.getScripts();
    if (scripts.isEmpty()) {
        throw new SpongeException("Cannot infer knowledge base '" + scriptKnowledgeBase.getName() + "' type because it has no files");
    }

    String fileName = scripts.get(0).getFileName();
    String extension = FilenameUtils.getExtension(fileName);

    Optional<KnowledgeBaseType> typeO = knowledgeBaseInterpreterFactories.values().stream()
            .filter(factory -> StringUtils.equalsIgnoreCase(factory.getSupportedType().getFileExtension(), extension))
            .map(factory -> factory.getSupportedType()).findFirst();

    if (!typeO.isPresent()) {
        throw new SpongeException("Unsupported file extension '" + extension + "' for file '" + fileName + "' in knowledge base '"
                + scriptKnowledgeBase.getName() + "'");
    }

    return typeO.get();
}
项目：gin    文件：TestRunnerTest.java    
@Test
public void compile() {

    testRunner.ensureDirectory(testRunner.getTmpDir());
    testRunner.copySource(new SourceFile(exampleSourceFilename));
    testRunner.compile();

    // Should have created temp source file
    File origSource = new File(exampleSourceFilename);
    String tmpClassFilename = FilenameUtils.removeExtension(origSource.getName()) + ".class";
    String tmpTestClassFilename = FilenameUtils.removeExtension(origSource.getName()) + "Test.class";

    File tmpClassFile = new File(testRunner.getTmpDir(), tmpClassFilename);
    File tmpTestClassFile = new File(testRunner.getTmpDir(), tmpTestClassFilename);

    assertTrue(tmpClassFile.exists());
    assertTrue(tmpTestClassFile.exists());

}
项目：cyberduck    文件：RenameExistingFilter.java    
/**
 * Rename existing file on server if there is a conflict.
 */
@Override
public void apply(final Path file, final Local local, final TransferStatus status,
                  final ProgressListener listener) throws BackgroundException {
    // Rename existing file before putting new file in place
    if(status.isExists()) {
        Path rename;
        do {
            final String proposal = MessageFormat.format(PreferencesFactory.get().getProperty("queue.upload.file.rename.format"),
                    FilenameUtils.getBaseName(file.getName()),
                    UserDateFormatterFactory.get().getMediumFormat(System.currentTimeMillis(), false).replace(Path.DELIMITER, '-').replace(':', '-'),
                    StringUtils.isNotBlank(file.getExtension()) ? String.format(".%s", file.getExtension()) : StringUtils.EMPTY);
            rename = new Path(file.getParent(), proposal, file.getType());
        }
        while(find.find(rename));
        if(log.isInfoEnabled()) {
            log.info(String.format("Rename existing file %s to %s", file, rename));
        }
        move.move(file, rename, new TransferStatus().exists(false), new Delete.DisabledCallback(), new DisabledConnectionCallback());
        if(log.isDebugEnabled()) {
            log.debug(String.format("Clear exist flag for file %s", file));
        }
        status.setExists(false);
    }
    super.apply(file, local, status, listener);
}
项目：Android-FileBrowser-FilePicker    文件：FileNavigator.java    
public File [] getFilesInCurrentDirectory() {
   if(mAllowedFileExtensionFilter!=null) {
       FilenameFilter fileNameFilter = new FilenameFilter() {
           @Override
           public boolean accept(File dir, String name) {
               String fileExtension = FilenameUtils.getExtension(name);
               if(mAllowedFileExtensionFilter.contains(fileExtension) || fileExtension.isEmpty() )
                   return true;
               else
                   return false;
           }
       };
       return mCurrentNode.listFiles(fileNameFilter);
   }
   return mCurrentNode.listFiles();
}
项目：airsonic    文件：CoverArtController.java    
/**
 * Returns an input stream to the image in the given file.  If the file is an audio file,
 * the embedded album art is returned. In addition returns the mime type
 */
private Pair<InputStream, String> getImageInputStreamWithType(File file) throws IOException {
    InputStream is;
    String mimeType;
    if (jaudiotaggerParser.isApplicable(file)) {
        LOG.trace("Using Jaudio Tagger for reading artwork from {}", file);
        MediaFile mediaFile = mediaFileService.getMediaFile(file);
        Artwork artwork;
        try {
            LOG.trace("Reading artwork from file {}", mediaFile);
            artwork = jaudiotaggerParser.getArtwork(mediaFile);
        } catch (Exception e) {
            LOG.debug("Could not read artwork from file {}", mediaFile);
            throw new RuntimeException(e);
        }
        is = new ByteArrayInputStream(artwork.getBinaryData());
        mimeType = artwork.getMimeType();
    } else {
        is =  new FileInputStream(file);
        mimeType = StringUtil.getMimeType(FilenameUtils.getExtension(file.getName()));
    }
    return Pair.of(is, mimeType);
}
项目：DIA-Umpire-Maven    文件：TargetMatchScoring.java    
public static TargetMatchScoring LibraryMatchReadJS(String Filename, String LibID) throws FileNotFoundException {

        if (!new File(FilenameUtils.getFullPath(Filename) + FilenameUtils.getBaseName(Filename) + "_" + LibID + "_LibMatch.serFS").exists()) {
            return null;
        }
        TargetMatchScoring match = null;
        try {
            Logger.getRootLogger().info("Loading Target library match results to file:" + FilenameUtils.getFullPath(Filename) + FilenameUtils.getBaseName(Filename) + "_" + LibID + "_LibMatch.ser...");
            FileInputStream fileIn = new FileInputStream(FilenameUtils.getFullPath(Filename) + FilenameUtils.getBaseName(Filename) + "_" + LibID + "_LibMatch.ser");
            ObjectInputStream in = new ObjectInputStream(fileIn);
            match = (TargetMatchScoring) in.readObject();
            in.close();
            fileIn.close();
        } catch (Exception ex) {
            Logger.getRootLogger().error(ExceptionUtils.getStackTrace(ex));
            return null;
        }
        return match;
    }
项目：airsonic    文件：JaudiotaggerParser.java    
/**
 * Returns whether this parser is applicable to the given file.
 *
 * @param file The music file in question.
 * @return Whether this parser is applicable to the given file.
 */
@Override
public boolean isApplicable(File file) {
    if (!file.isFile()) {
        return false;
    }

    String format = FilenameUtils.getExtension(file.getName()).toLowerCase();

    return format.equals("mp3") ||
            format.equals("m4a") ||
            format.equals("aac") ||
            format.equals("ogg") ||
            format.equals("flac") ||
            format.equals("wav") ||
            format.equals("mpc") ||
            format.equals("mp+") ||
            format.equals("ape") ||
            format.equals("wma");
}
项目：java-natives    文件：NativeLibrary.java    
private File extractNativeLibraries(final File nativesDirectory, final String libraryPath) {
  final URL libraryUrl = Thread.currentThread().getContextClassLoader().getResource(libraryPath);
  if (libraryUrl == null) {
    throw new IllegalArgumentException(
        String.format("Unable to find native binary %s for library %s", libraryPath, key));
  }
  final String libraryName;
  libraryName = FilenameUtils.getName(libraryPath);
  final File libraryFile = new File(nativesDirectory, libraryName);
  libraryFile.getParentFile().mkdirs();
  try {
    final URLConnection urlConnection = libraryUrl.openConnection();
    try (final InputStream inputStream = urlConnection.getInputStream()) {
      try (final OutputStream outputStream =
          new BufferedOutputStream(new FileOutputStream(libraryFile))) {
        IOUtils.copy(inputStream, outputStream);
      }
    }
  } catch (final Exception exception) {
    throw new RuntimeException(exception);
  }
  if (deleteOnExit) {
    libraryFile.deleteOnExit();
  }
  // TODO make accessible for linux and mac
  return libraryFile;
}
项目：Reer    文件：PCHUtils.java    
public static <T extends NativeCompileSpec> File generatePCHSourceFile(T original, File sourceFile) {
    File generatedSourceDir = new File(original.getTempDir(), "pchGenerated");
    generatedSourceDir.mkdirs();
    File generatedSource = new File(generatedSourceDir, FilenameUtils.removeExtension(sourceFile.getName()).concat(getSourceFileExtension(original.getClass())));
    File headerFileCopy = new File(generatedSourceDir, sourceFile.getName());
    try {
        FileUtils.copyFile(sourceFile, headerFileCopy);
        FileUtils.writeStringToFile(generatedSource, "#include \"".concat(headerFileCopy.getName()).concat("\""));
        return generatedSource;
    } catch (IOException e) {
        throw new UncheckedIOException(e);
    }
}
项目：Cognizant-Intelligent-Test-Scripter    文件：MIME.java    
public static String getType(String fileName) {
    try {
        return getTypeFor(FilenameUtils.getExtension(fileName));
    } catch (Exception ex) {
        LOG.log(Level.SEVERE, ex.getMessage(), ex);
    }
    return null;
}
项目：DIA-Umpire-Maven    文件：RTMappingExtLib.java    
public void GenerateModel() throws IOException {

        XYPointCollection points = new XYPointCollection();
        XYSeries series = new XYSeries("Peptide ions");
        XYSeriesCollection xySeriesCollection = new XYSeriesCollection();

        FileWriter writer = new FileWriter(FilenameUtils.getFullPath(TargetLCMS.mzXMLFileName) + "/" + FilenameUtils.getBaseName(TargetLCMS.mzXMLFileName) + "_" + libManager.LibID + "_RTMapPoints.txt");

        for (String pepkey : libManager.PeptideFragmentLib.keySet()) {
            if (TargetLCMS.GetPepIonList().containsKey(pepkey)) {
                PepFragmentLib peplib = libManager.GetFragmentLib(pepkey);
                for (float rt : peplib.RetentionTime) {
                    float y = TargetLCMS.GetPepIonList().get(pepkey).GetRT();
                    points.AddPoint(rt, y);
                    series.add(new XYDataItem(rt, y));
                    writer.write(rt + "\t" + y + "\n");
                }
            }
        }
        writer.close();
        regression = new PiecewiseRegression(parameter.MaxCurveRTRange, parameter.MaxCurveRTRange);
        regression.SetData(points);
        float R2 = regression.GetR2();
        Logger.getRootLogger().info("Retention time prediction model:(" + FilenameUtils.getBaseName(TargetLCMS.mzXMLFileName) + "..R2=" + R2 + "(No. of commonly identified peptide ions=" + points.PointCount() + ")");

        GenerateRTMapPNG(xySeriesCollection, series, R2);
    }
项目：GitHub    文件：Jsonschema2Pojo.java    
private static String getNodeName(URL file, GenerationConfig config) {
    try {
        String fileName = FilenameUtils.getName(URLDecoder.decode(file.toString(), "UTF-8"));
        String[] extensions = config.getFileExtensions();
        boolean extensionRemoved = false;
        for (int i = 0; i < extensions.length; i++) {
            String extension = extensions[i];
            if (extension.length() == 0) {
                continue;
            }
            if (!extension.startsWith(".")) {
                extension = "." + extension;
            }
            if (fileName.endsWith(extension)) {
                fileName = removeEnd(fileName, extension);
                extensionRemoved = true;
                break;
            }
        }
        if (!extensionRemoved) {
            fileName = FilenameUtils.getBaseName(fileName);
        }
        return fileName;
    } catch (UnsupportedEncodingException e) {
        throw new IllegalArgumentException(String.format("Unable to generate node name from URL: %s", file.toString()), e);
    }

}
项目：incubator-servicecomb-java-chassis    文件：SchemaLoader.java    
/**
 * resource的路径格式，至少是以这个形式结尾：schemaId.yaml
 */
public SchemaMeta registerSchema(String microserviceName, Resource resource) {
  try {
    String schemaId = FilenameUtils.getBaseName(resource.getFilename());

    String swaggerContent = IOUtils.toString(resource.getURL());
    SchemaMeta schemaMeta = registerSchema(microserviceName, schemaId, swaggerContent);

    return schemaMeta;
  } catch (Throwable e) {
    throw new Error(e);
  }
}
项目：DIA-Umpire-Maven    文件：TargetMatchScoring.java    
public boolean LibraryMatchWrite() throws FileNotFoundException {
    try {
        Logger.getRootLogger().info("Writing Target match results to file:" + FilenameUtils.getFullPath(Filename) + FilenameUtils.getBaseName(Filename) + "_" + LibID + "_LibMatch.serFS...");
        FileOutputStream fout = new FileOutputStream(FilenameUtils.getFullPath(Filename) + FilenameUtils.getBaseName(Filename) + "_" + LibID + "_LibMatch.serFS", false);
        FSTObjectOutput out = new FSTObjectOutput(fout);
        out.writeObject(this);
        out.close();
        fout.close();
    } catch (Exception ex) {
        Logger.getRootLogger().error(ExceptionUtils.getStackTrace(ex));
        return false;
    }
    return true;
}
项目：onprom    文件：OnpromToolkit.java    
private Void saveAll() {
  File selectedFile = IOUtility.selectFileToSave(FileType.ONTOLOGY);
  if (selectedFile != null) {
    String fileName = FilenameUtils.removeExtension(selectedFile.getAbsolutePath());
    for (int i = 0; i < objects.getCount(); i++) {
      TreeNode node = objects.getNode(i);
      saveObject(fileName, node.getType(), node.getUserObject());
    }
  }
  return null;
}
项目：DIA-Umpire-Maven    文件：InstrumentParameter.java    
public void WriteParamSerialization(String mzXMLFileName) {
    try {
        Logger.getRootLogger().info("Writing parameter to file:" + FilenameUtils.getFullPath(mzXMLFileName) + FilenameUtils.getBaseName(mzXMLFileName) + "_params.ser...");
        FileOutputStream fout = new FileOutputStream(FilenameUtils.getFullPath(mzXMLFileName) + FilenameUtils.getBaseName(mzXMLFileName) + "_params.ser", false);
        ObjectOutputStream oos = new ObjectOutputStream(fout);
        oos.writeObject(this);
        oos.close();
        fout.close();
    } catch (Exception ex) {
        Logger.getRootLogger().error(ExceptionUtils.getStackTrace(ex));
    }
}
项目：DIA-Umpire-Maven    文件：LCMSPeakMS1.java    
public void AssignMappedPepQuant() throws SQLException, IOException {
    if (IDsummary == null || IDsummary.GetMappedPepIonList().isEmpty()) {
        return;
    }
    if (!FilenameUtils.getBaseName(IDsummary.mzXMLFileName).equals(FilenameUtils.getBaseName(ScanCollectionName))) {
        return;
    }
    Logger.getRootLogger().info("Assigning peak cluster to mapped peptide IDs......");
    for (PepIonID pepIonID : IDsummary.GetMappedPepIonList().values()) {
        pepIonID.CreateQuantInstance(MaxNoPeakCluster);

        ArrayList<PeakCluster> clusterList = FindAllPeakClustersForMappedPep(pepIonID);

        if (!clusterList.isEmpty()) {
            PeakCluster targetCluster = null;
            float Score = 0f;

            for (int i = 0; i < clusterList.size(); i++) {
                PeakCluster cluster = clusterList.get(i);
                if ("".equals(cluster.AssignedPepIon)) {
                    Score = cluster.PeakHeight[0] * cluster.MS1Score;
                    if (targetCluster == null || clusterList.get(i).MS1Score > Score) {
                        targetCluster = cluster;
                        Score = cluster.MS1Score;
                    }
                }
            }
            if (targetCluster != null) {
                pepIonID.PeakArea = targetCluster.PeakArea;
                pepIonID.PeakHeight = targetCluster.PeakHeight;
                pepIonID.MS1PeakClusters.add(targetCluster);
                pepIonID.PeakClusterScore = targetCluster.MS1Score;
                pepIonID.PeakRT = targetCluster.PeakHeightRT[0];
                pepIonID.ObservedMz = targetCluster.mz[0];
                targetCluster.AssignedPepIon = pepIonID.GetKey();
            }
        }
    }
}
项目：ZooKeeper    文件：QuorumKerberosHostBasedAuthTest.java    
private static void setupJaasConfigEntries(String hostServerPrincipal,
        String hostLearnerPrincipal, String hostNamedLearnerPrincipal) {
    String keytabFilePath = FilenameUtils.normalize(KerberosTestUtils.getKeytabFile(), true);
    String jaasEntries = new String(""
            + "QuorumServer {\n"
            + "       com.sun.security.auth.module.Krb5LoginModule required\n"
            + "       useKeyTab=true\n"
            + "       keyTab=\"" + keytabFilePath + "\"\n"
            + "       storeKey=true\n"
            + "       useTicketCache=false\n"
            + "       debug=true\n"
            + "       doNotPrompt=true\n"
            + "       refreshKrb5Config=true\n"
            + "       principal=\"" + KerberosTestUtils.replaceHostPattern(hostServerPrincipal) + "\";\n" + "};\n"
            + "QuorumLearner {\n"
            + "       com.sun.security.auth.module.Krb5LoginModule required\n"
            + "       useKeyTab=true\n"
            + "       keyTab=\"" + keytabFilePath + "\"\n"
            + "       storeKey=true\n"
            + "       useTicketCache=false\n"
            + "       debug=true\n"
            + "       doNotPrompt=true\n"
            + "       refreshKrb5Config=true\n"
            + "       isInitiator=true\n"
            + "       principal=\"" + KerberosTestUtils.replaceHostPattern(hostLearnerPrincipal) + "\";\n" + "};\n"
            + "QuorumLearnerMyHost {\n"
            + "       com.sun.security.auth.module.Krb5LoginModule required\n"
            + "       useKeyTab=true\n"
            + "       keyTab=\"" + keytabFilePath + "\"\n"
            + "       storeKey=true\n"
            + "       useTicketCache=false\n"
            + "       debug=true\n"
            + "       doNotPrompt=true\n"
            + "       refreshKrb5Config=true\n"
            + "       isInitiator=true\n"
            + "       principal=\"" + hostNamedLearnerPrincipal + "\";\n" + "};\n");
    setupJaasConfig(jaasEntries);
}
项目：WurmMapGen    文件：FileGen.java    
/**
 * Generates the file
 */
public void generateFile() throws IOException {
    // Generate data
    String data = generateData();
    if (data == null) return;

    // Write data to file
    Logger.details("Writing " + filePath);
    FileWriter writer = new FileWriter(filePath, false);
    writer.write(data);
    writer.close();

    Logger.ok("Created " + FilenameUtils.getName(filePath));
}
项目：couchmove    文件：FileUtils.java    
/**
 * Get a path Stream to iterate over all regular files matching extensions in the directory
 *
 * @param directoryPath the path to the directory
 * @param extensions    The extensions of the files to iterate over
 * @return a new Stream object
 */
private static Stream<Path> directoryStream(@NotNull Path directoryPath, String... extensions) {
    try {
        return StreamSupport.stream(Files.newDirectoryStream(directoryPath).spliterator(), false)
                .filter(Files::isRegularFile)
                .filter(path -> Arrays.stream(extensions)
                        .anyMatch(extension -> FilenameUtils
                                .getExtension(path.getFileName().toString()).toLowerCase()
                                .equals(extension.toLowerCase())));
    } catch (IOException e) {
        throw new CouchmoveException("Unable to read directory '" + directoryPath + "'", e);
    }
}
项目：Open_Source_ECOA_Toolset_AS5    文件：NodePropertySource.java    
private String[] getComponentImpl() {
    ArrayList<String> ret = new ArrayList<String>();
    ret.add("");
    ArrayList<String> cDef = new PluginUtil().getResourcesWithExtension("cimpl", node.getContainerName());
    for (String str : cDef) {
        String name = FilenameUtils.getBaseName(str);
        ret.add(name);
    }
    return ret.toArray(new String[0]);
}
项目：cloud-language-servers-container    文件：WSSynchronization.java    
/**
 * @see HttpServlet#doPut(HttpServletRequest request, HttpServletResponse response)
 */
protected void doPost(HttpServletRequest request, HttpServletResponse response) throws ServletException, IOException {
    // Check if it is LSP registration
    String lspReg = request.getHeader("Register-lsp");
    if ( lspReg != null ) {
        handleLSPDest(Boolean.parseBoolean(lspReg), request.getReader());
        return;
    }

    // Otherwise process data passed from DI
    if( !checkSync() ) {
        response.setStatus(HttpServletResponse.SC_NO_CONTENT);
        return;
    }
    String artifactRelPath = request.getRequestURI().substring(request.getServletPath().length() + 1);
    String artifactPath = this.saveDir + artifactRelPath;

    File destination = new File(FilenameUtils.normalize(artifactPath));
    // Expected: one part containing zip
    try{
        Part part = request.getParts().iterator().next();

        WSChangeObserver changeObserver = new WSChangeObserver(ChangeType.CHANGE_UPDATED, lspDestPath);
        if (destination.exists() && !destination.isDirectory() && extract(part.getInputStream(), changeObserver)) {
            changeObserver.notifyLSP();
            response.setContentType("application/json");
            response.getWriter().append(String.format("{ \"updated\": \"%s\"}", artifactRelPath));
            response.setStatus(HttpServletResponse.SC_OK);
        } else {
            response.setStatus(HttpServletResponse.SC_INTERNAL_SERVER_ERROR);
        }
    } catch (NoSuchElementException ePart) {
        response.setStatus(HttpServletResponse.SC_NOT_MODIFIED);
    }
}
项目：JAddOn    文件：JUtils.java    
public static String[] getNamesWithOutExtensionOufOfFiles(File[] files) {
    String[] ausgabe = new String[files.length];
    int i = 0;
    for(File f : files) {
        ausgabe[i] = FilenameUtils.getBaseName(f.getName());
        i++;
    }
    return ausgabe;
}
项目：cyberduck    文件：QloudsonicVoucherFinder.java    
public QloudsonicVoucherFinder() {
    super(LocalFactory.get(
            PreferencesFactory.get().getProperty("application.support.path")), new Filter<Local>() {
        @Override
        public boolean accept(final Local file) {
            return "qloudsonicvoucher".equals(FilenameUtils.getExtension(file.getName()));
        }

        @Override
        public Pattern toPattern() {
            return Pattern.compile("qloudsonicvoucher");
        }
    });
}
项目：course-examples    文件：Photo.java    
/**
 * Constructor
 *
 * @param photoURI the URI of the photo file.
 */
public Photo(URI photoURI) throws FileNotFoundException {
    file = new File(photoURI);
    String filePath = file.getAbsolutePath();
    Image img = buildImage();

    baseName = FilenameUtils.getBaseName(filePath);
    format = FilenameUtils.getExtension(filePath);
    height = img.getHeight();
    width = img.getWidth();
}